PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00008218001
Common NameGSBRNA2T00008218001, LOC106427438
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 195aa    MW: 21231.4 Da    PI: 8.6953
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00008218001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.53.4e-393190261
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                         ++++l+cprC s ntkfCyynny+lsqPr+fCk+CrryWtkGG+lrn+PvGgg+rkn ++
  GSBRNA2T00008218001 31 EQEQLNCPRCASPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGSLRNIPVGGGTRKNSSK 90
                         57899***************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.1E-323389IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8263589IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-243786IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MQEDMTSAAA YYPHQSMIMT AKQQQQPELP EQEQLNCPRC ASPNTKFCYY NNYNLSQPRH  60
FCKNCRRYWT KGGSLRNIPV GGGTRKNSSK RSSVGSSSSS SSSSSPKSKT VAVSDQESRN  120
TGNSGQEMDP TRMLYGLPVG DPSGGSFSSL LVSNMQQIRG VNYETGSGWY PGMELGLGSG  180
IRRNDDAALT DEQN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.40900.0seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-33AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625262.11e-143PREDICTED: dof zinc finger protein DOF1.7-like
RefseqXP_013723626.11e-143PREDICTED: dof zinc finger protein DOF1.7-like
SwissprotO821556e-87DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A078IVE41e-143A0A078IVE4_BRANA; BnaC03g77910D protein
TrEMBLA0A0D3BMQ31e-143A0A0D3BMQ3_BRAOL; Uncharacterized protein
STRINGBra014297.1-P1e-108(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-71DOF zinc finger protein 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]